| ...de pronto, miniature for 7 instruments (2012)  | 
| ...over the night sea, the moon rises for any instruments (1978)  | 
| 5 Short Pieces for Flutes (1988)  | 
| 9 Miniatures for Various Instruments (2014)  | 
| Abbau-Déconstruction    | 
| Abbau-trace for 10 instruments    | 
| Adagio for organo (1979) Op.2  | 
| Anthem for San Luis Potosí City for choir, symphony orchestra, Huastec trio (2008)  | 
| Arborescence for flute or any instrument    | 
| BassClarinet Concerto    | 
| Bird for alto saxophone (E♭), tape (1987)  | 
| Buscazón 1 for two harps (1994)  | 
| Buscazón II for harp and flute (1997)  | 
| Canon perpetuo per moto contrario (1978) Op.1  | 
| Chaak Song for Flute and Percussion (1986)  | 
| Chamber Concerto for 7 instruments (1984)  | 
| Clouds - homage to Messiaen    | 
| Collage of musics for Symphony Orchestra with Soloists (2016)  | 
| Connecting Aecstasies for 8 channels (2015)  | 
| Crests for Organ (2008)  | 
| Danz-al-Sub for flauta and marimba (1997)  | 
| DifferAnce for two violins (2016)  | 
| Directional-Dimensional for String Quartet (2017)  | 
| Dis-continuum for string quartet (2014)  | 
| Eye-Oeil-Ojo-Auge on Wittgenstein Tractatus    | 
| Flute Duet (1987)  | 
| Flute Notation (method)  | 
| Flute Quartet No.1 (1989)  | 
| Flute Quartet No.2 (1988)  | 
| Flute Quartet No.3 (2004)  | 
| Flute Trio No.1 (1979)  | 
| Flute Trio No.2 (1989)  | 
| Flute Trio No.3 (2001)  | 
| Fold for flute and percussion (1996)  | 
| Grain-Carré for string quartet  | 
| HAIKAIS for piano (1981)  | 
| Homm-Ages for any group of instruments (2013)  | 
| HUNAB-KÚ for percussion quartet, Piano and Celesta (1999-2000)  | 
| Hymnos for Symphony Orchestra and Choir (2016)  | 
| Interstices for 5 instruments (2007)  | 
| Ja-guaar for bass clarinet (2003)  | 
| Jardin I for flute & two clarinets  | 
| Jardin II for Flute and guitar(1983)  | 
| Jardin III for four flutes (1989)  | 
| Kaleydoscope for Four flutes (2004)  | 
| Kin-toccata for clavier (1998)  | 
| K`isa for 4 flutes (1989)  | 
| Llori-llori, sonate for Harpsichord or electronic keyboard (1982)  | 
| Lointain-de Près for 2 flutists or improvisers (1999)  | 
| Móvil for piano (2008)  | 
| Magic-Track-Carpet for instrument (voice), soundtrack (1991)  | 
| March to the Music for chorus, orchestra (2016)  | 
| Mass mixed chorus (spatialized) and orchestra (2016)  | 
| Music for Boxes or Cubes (1987)  | 
| Nautilus for French Horn (1986)  | 
| Nomádica for fifteen instruments (1998)  | 
| Nube de Alas for tape (1986)  | 
| Obsidian Mirror for 7 instruments (1997)  | 
| Omeyotl-Duality for cello (1994)  | 
| Point for clarinet, cello and piano (1984)  | 
| Pop-Wuj I and II percussion (2011)  | 
| Processional for bassoon solo (2005)  | 
| PRYSM .666 for Clarinet, Bassoon & Piano (1991)  | 
| Quincunce, Concerto Grosso for Wind Ensemble and Four Orchestras (2016)  | 
| Rap du Soleil Noir, voice quartet version    | 
| Requiem for strings, optional solo and/or soundtrack (1992)  | 
| Rizoma, Concerto for Flute and Percussion (1996)  | 
| Rugg for solo viola    | 
| Saxophone Quartet No.1 (1990)  | 
| Sikuriada Concerto Grosso for Andes flutes Ensemble and Occidental Flutes Orchestra (2002)  | 
| Sketches for the Fifth Sun for Symphony Orchestra, Choir and Narrator (1992)  | 
| Stones-Oiseau-Baleine, Electro-acoustic Music (1995)  | 
| String Quartet No.1 (1984)  | 
| String Quartet No.2  | 
| String Quartet No.3 (2015)  | 
| Symphony No.1 `Ek` (1990)  | 
| Testimonial for mixed choir (1990)  | 
| The Book of Birds for Alberto Blanco`s voice, Acoustic and Electronic instruments (1993)  | 
| The Feast to the Gods, opera (2012-13)  | 
| The Red Isle for electronic sounds (2009)  | 
| Three granite stones, miniatures for piano (1982)  | 
| Three Watercolors for Flute Orchestra and contrabass flute    | 
| Tlaloques, Concerto for Bass Clarinet and Orchestra (2003)  | 
| Toroide for alto flute, bass clarinet, piano (2004)  | 
| Trio for flutes (2001)  | 
| Tutuguri for 12 voices (2009)  | 
| Tzolkin, Concerto for Flute and Percussion (1996)  | 
| Untitled, Three Watercolors for 17 Flutes (1986)  | 
| Vaisseau I, Electro-Acoustic music (1989)  | 
| Variations on the theme `Silent Night` for Any instrument(s) (1993)  | 
| Windows, Fenêtres, Ventanas for Orchestra    | 
| Woodwind Quintet No.1 (1987/2013)  | 
| Xmmash for cello and electronics (2018)  | 
| You (name) for flute solo (2004)  | 
| Zapateado de Xibalba for piccolo, glockenspiel, vibraphone (1986)  |